PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca6000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 387aa    MW: 43467 Da    PI: 4.6529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca6000.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.96e-34211601128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 
                lp+G++F+Ptd+e++++ L+++ +g++     +  +e+i++vd    i++++P++Lp  vk++ +  +fF+++ k+y+tgkrk+r ++     + +W++t
  Dca6000.1  21 LPRGVKFDPTDQEIIQHLLAQSGKGNErphpfI--SEFIPTVDeeegICYTHPSNLP-GVKQDGTASHFFHRSIKAYNTGKRKRRRIHsddegDVRWHKT 117
                799*****************9999998776442..334555544445**********.777888999******************75545544778**** PP

        NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                g++k+v++ ++ ++g+kk++v+y  + +  k+ekt+Wvmh+y+l
  Dca6000.1 118 GRTKPVIV-NDVQKGCKKIMVLYvsTSKGGKAEKTNWVMHQYHL 160
                ********.999***********6655777888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3612179IPR003441NAC domain
PROSITE profilePS5100530.63321179IPR003441NAC domain
PfamPF023653.3E-1522160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCRNAETGDF VTKVIQEWPG LPRGVKFDPT DQEIIQHLLA QSGKGNERPH PFISEFIPTV  60
DEEEGICYTH PSNLPGVKQD GTASHFFHRS IKAYNTGKRK RRRIHSDDEG DVRWHKTGRT  120
KPVIVNDVQK GCKKIMVLYV STSKGGKAEK TNWVMHQYHL GVQEDENEGE FVISKVFLQQ  180
QHVKQNDNSG RNVPDTPDKL VVKLDPVTPK PVTPDHQQIE IQCNLIEEPL LPSLDSVTQD  240
DGIEYADEMK LPEASRSSDH DNDADETAAD QGLDHDNNQI GSEENIYLVD SQQLIAGLQL  300
CADFFQSQSP TRDENSGDVA RKRSVLSEYA QLGSEVLKKD LEECHNFVPD AASVDIDTQP  360
EVRLSQLDFC SQESYSAWGS NKIDDST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-132116015140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102KRKRRR
298102RKRRR
399103KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695823.11e-151PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-122NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0K9RQ221e-153A0A0K9RQ22_SPIOL; Uncharacterized protein (Fragment)
STRINGPOPTR_0008s11550.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-123NAC family protein